PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52922.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 747aa    MW: 86583.1 Da    PI: 8.5647
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52922.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.82.3e-2046139190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY+ YA   GF+vr+ ++kk  r+g ++++ +vC++eg+ +++kk       +ek++r+++ +r+gCka++++ ++ +g  +v+k+++ HnHel+
  Dca52922.1  46 QFYKIYALASGFDVRRYTTKKW-RDGAVKTKLLVCNREGFWKPKKKLevndvdAEKQERRKKIHRVGCKARMRLFMM-NGIVCVDKFNEYHNHELV 139
                 6****************99887.8999****************9998999*9989999999***************9.****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1646139IPR004330FAR1 DNA binding domain
PfamPF105515.9E-30261353IPR018289MULE transposase domain
PROSITE profilePS5096610.175541579IPR007527Zinc finger, SWIM-type
SMARTSM005750.0066554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MDNLQIIPVE GEVNEGLEEG QFCRSVEDAF TPFVGKQFEN IEEAIQFYKI YALASGFDVR  60
RYTTKKWRDG AVKTKLLVCN REGFWKPKKK LEVNDVDAEK QERRKKIHRV GCKARMRLFM  120
MNGIVCVDKF NEYHNHELVS VENREFQKLA RHLSAYHKEL IVSNSRLNIG ATKTYRMLKE  180
QVNGYQNIGA SLADFKNFHT AVKCFIHERD GQLFVDHFKS MKETRAGFYF DYDIDEDGSL  240
RRAIWADGYA RKNYAVFGDA VAFDPTYSTN RYSMVFTPFT GVDNHRKSVT FAGALIAKED  300
YESFNWVFSR FLHAMDGKEP EYIITDQDPG IIKSVNSVFK KARHRFCMWH IMNKVPTKFG  360
ANKADYQIFL KKLNAIIWDV NIEPEEFDMR WVETMEEHGV GVGDWFEEAF AIRKQWIMAH  420
CKDLKMGGIM RTTQRSESEN RFFKKFEHKY GTLVEFWMRF ESAMDQQRHN YKKLDNESSQ  480
SSAKLIGSTE LEKHGVTVFT DVIFKEFQKE LMSSMTTCRC VGFRVEDGYE ISSVKDAERD  540
LVVEVRYSTG TKSATCSCGL FHSWGIVCRH VIWIYAGLGF KKLPDESIPI RWRKDALDHS  600
ALTFDSMDSL KGKTIEDDQL ELSTLWAEFH QTVSVVRAHG KKSVESLCKL VKEFRLGLSN  660
NCENMSKDKE MEQLLGCKVS TEISILPPKQ SKNKGTAKRL TSMKSKAVEV AKKPKRMCKN  720
CKQMANHDKR NCPNPYVESL ELVEELN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187105KKKLEVNDVDAEKQERRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-76FAR1-related sequence 5